# Modelling DNA and RNA secondary structures using matrix insertion-deletion systems

Lakshmanan Kuppusamy; Anand Mahendran

International Journal of Applied Mathematics and Computer Science (2016)

- Volume: 26, Issue: 1, page 245-258
- ISSN: 1641-876X

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topLakshmanan Kuppusamy, and Anand Mahendran. "Modelling DNA and RNA secondary structures using matrix insertion-deletion systems." International Journal of Applied Mathematics and Computer Science 26.1 (2016): 245-258. <http://eudml.org/doc/276672>.

@article{LakshmananKuppusamy2016,

abstract = {Insertion and deletion are operations that occur commonly in DNA processing and RNA editing. Since biological macromolecules can be viewed as symbols, gene sequences can be represented as strings and structures can be interpreted as languages. This suggests that the bio-molecular structures that occur at different levels can be theoretically studied by formal languages. In the literature, there is no unique grammar formalism that captures various bio-molecular structures. To overcome this deficiency, in this paper, we introduce a simple grammar model called the matrix insertion-deletion system, and using it we model several bio-molecular structures that occur at the intramolecular, intermolecular and RNA secondary levels.},

author = {Lakshmanan Kuppusamy, Anand Mahendran},

journal = {International Journal of Applied Mathematics and Computer Science},

keywords = {bio-molecular structures; insertion-deletion systems; intermolecular; intramolecular; secondary structures},

language = {eng},

number = {1},

pages = {245-258},

title = {Modelling DNA and RNA secondary structures using matrix insertion-deletion systems},

url = {http://eudml.org/doc/276672},

volume = {26},

year = {2016},

}

TY - JOUR

AU - Lakshmanan Kuppusamy

AU - Anand Mahendran

TI - Modelling DNA and RNA secondary structures using matrix insertion-deletion systems

JO - International Journal of Applied Mathematics and Computer Science

PY - 2016

VL - 26

IS - 1

SP - 245

EP - 258

AB - Insertion and deletion are operations that occur commonly in DNA processing and RNA editing. Since biological macromolecules can be viewed as symbols, gene sequences can be represented as strings and structures can be interpreted as languages. This suggests that the bio-molecular structures that occur at different levels can be theoretically studied by formal languages. In the literature, there is no unique grammar formalism that captures various bio-molecular structures. To overcome this deficiency, in this paper, we introduce a simple grammar model called the matrix insertion-deletion system, and using it we model several bio-molecular structures that occur at the intramolecular, intermolecular and RNA secondary levels.

LA - eng

KW - bio-molecular structures; insertion-deletion systems; intermolecular; intramolecular; secondary structures

UR - http://eudml.org/doc/276672

ER -

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