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In October 1997 we celebrate the fiftieth anniversary of the founding of
the Institute for Mathematics and Informatics (IMI) of the Bulgarian Academy
of Sciences (BAS).
One of the most widely studied protein structure prediction models is the hydrophobic-hydrophilic (HP) model, which explains the hydrophobic interaction and tries to maximize the number of contacts among hydrophobic amino-acids. In order to find a lower bound for the number of contacts, a number of heuristics have been proposed, but finding the optimal solution is still a challenge. In this research, we focus on creating a new integer programming model which is capable to provide tractable input...
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