Optimized Schwarz Methods for the Bidomain system in electrocardiology
Luca Gerardo-Giorda; Mauro Perego
- Volume: 47, Issue: 2, page 583-608
- ISSN: 0764-583X
Access Full Article
topAbstract
topHow to cite
topGerardo-Giorda, Luca, and Perego, Mauro. "Optimized Schwarz Methods for the Bidomain system in electrocardiology." ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique 47.2 (2013): 583-608. <http://eudml.org/doc/273092>.
@article{Gerardo2013,
abstract = {The propagation of the action potential in the heart chambers is accurately described by the Bidomain model, which is commonly accepted and used in the specialistic literature. However, its mathematical structure of a degenerate parabolic system entails high computational costs in the numerical solution of the associated linear system. Domain decomposition methods are a natural way to reduce computational costs, and Optimized Schwarz Methods have proven in the recent years their effectiveness in accelerating the convergence of such algorithms. The latter are based on interface matching conditions more efficient than the classical Dirichlet or Neumann ones. In this paper we analyze an Optimized Schwarz approach for the numerical solution of the Bidomain problem. We assess the convergence of the iterative method by means of Fourier analysis, and we investigate the parameter optimization in the interface conditions. Numerical results in 2D and 3D are given to show the effectiveness of the method.},
author = {Gerardo-Giorda, Luca, Perego, Mauro},
journal = {ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique},
keywords = {domain decomposition; optimized schwarz methods; computational electrocardiology; optimized Schwarz methods},
language = {eng},
number = {2},
pages = {583-608},
publisher = {EDP-Sciences},
title = {Optimized Schwarz Methods for the Bidomain system in electrocardiology},
url = {http://eudml.org/doc/273092},
volume = {47},
year = {2013},
}
TY - JOUR
AU - Gerardo-Giorda, Luca
AU - Perego, Mauro
TI - Optimized Schwarz Methods for the Bidomain system in electrocardiology
JO - ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique
PY - 2013
PB - EDP-Sciences
VL - 47
IS - 2
SP - 583
EP - 608
AB - The propagation of the action potential in the heart chambers is accurately described by the Bidomain model, which is commonly accepted and used in the specialistic literature. However, its mathematical structure of a degenerate parabolic system entails high computational costs in the numerical solution of the associated linear system. Domain decomposition methods are a natural way to reduce computational costs, and Optimized Schwarz Methods have proven in the recent years their effectiveness in accelerating the convergence of such algorithms. The latter are based on interface matching conditions more efficient than the classical Dirichlet or Neumann ones. In this paper we analyze an Optimized Schwarz approach for the numerical solution of the Bidomain problem. We assess the convergence of the iterative method by means of Fourier analysis, and we investigate the parameter optimization in the interface conditions. Numerical results in 2D and 3D are given to show the effectiveness of the method.
LA - eng
KW - domain decomposition; optimized schwarz methods; computational electrocardiology; optimized Schwarz methods
UR - http://eudml.org/doc/273092
ER -
References
top- [1] LifeV software. http://www.LifeV.org.
- [2] Trilinos software. http://trilinos.sandia.gov.
- [3] A. Alonso-Rodriguez and L. Gerardo-Giorda, New non-overlapping domain decomposition methods for the time-harmonic Maxwell system. SIAM J. Sci. Comput.28 (2006) 102–122. Zbl1106.78014MR2219289
- [4] P. Bochev and R. Lehouc, On the finite element solution of the pure Neumann problem. SIAM Rev.47 (2005) 50–66. Zbl1084.65111MR2149101
- [5] T.F. Chan and T.P. Mathew, Domain decomposition algorithms, in Acta Numerica 1994. Cambridge University Press (1994) 61–143. Zbl0809.65112MR1288096
- [6] P. Charton, F. Nataf and F. Rogier, Méthode de décomposition de domaine pour l’équation d’advection-diffusion. C. R. Acad. Sci.313 (1991) 623–626. Zbl0736.76042MR1133498
- [7] P. Chevalier and F. Nataf, Symmetrized method with optimized second-order conditions for the Helmholtz equation, in Domain decomposition methods (Boulder, CO, 1997). Amer. Math. Soc. 10 (1998) 400–407. Zbl0909.65105MR1649636
- [8] R.H. Clayton, O.M. Bernus, E.M. Cherry, H. Dierckx, F.H. Fenton, L. Mirabella, A.V. Panfilov, F.B. Sachse, G. Seemann and H. Zhang, Models of cardiac tissue electrophysiology : Progress, challenges and open questions. Progr. Bioph. Molec. Biol.104 (2011) 22–48.
- [9] R.H. Clayton and A.V. Panfilov, A guide to modelling cardiac electrical activity in anatomically detailed ventricles. Progr. Bioph. Molec. Biol.96 (2008) 19–43.
- [10] P. Colli Franzone and L.F. Pavarino, A parallel solver for reaction-diffusion systems in computational electrocardiology. Math. Models Methods Appl. Sci.14 (2004) 883–911. Zbl1068.92024MR2069498
- [11] P. Colli Franzone, L. Pavarino and G. Savaré, Computational electrocardiology : mathematical and numerical modeling, in Complex Systems in Biomedicine – A. Quarteroni, edited by L. Formaggia and A. Veneziani. Springer, Milan (2006). MR2488001
- [12] P. Colli Franzone and G. Savaré, Degenerate evolution systems modeling the cardiac electric field at micro and macroscopic level, in Evolution Equations, Semigroups and Functional Analysis, edited by A. Lorenzi and B. Ruf. Birkhauser (2002) 49–78. Zbl1036.35087MR1944157
- [13] Q. Deng, An analysis for a nonoverlapping domain decomposition iterative procedure. SIAM J. Sci. Comput.18 (1997) 1517–1525. Zbl0892.65074MR1465670
- [14] V. Dolean and F. Nataf, An Optimized Schwarz Algorithm for the compressible Euler equations, in Domain Decomposition Methods in Science and Engineering XVI (Proceedings of the DD16 Conference). Springer-Verlag (2007) 173–180. Zbl1213.76124MR2334101
- [15] V. Dolean, M.J. Gander and L. Gerardo-Giorda, Optimized Schwarz Methods for Maxwell’s equations. SIAM J. Sci. Comput.31 (2009) 2193–2213. Zbl1192.78044MR2516149
- [16] O. Dubois, Optimized Schwarz Methods with Robin conditions for the Advection-Diffusion Equation, in Domain Decomposition Methods in Science and Engineering XVI (Proceedings of the DD16 Conference). Springer-Verlag (2007) 181–188. Zbl1183.65030MR2334102
- [17] B. Engquist and H.-K. Zhao, Absorbing boundary conditions for domain decomposition. Appl. Numer. Math.27 (1998) 341–365. Zbl0935.65135MR1644668
- [18] E. Faccioli, F. Maggio, A. Quarteroni and A. Tagliani, Spectral domain decomposition methods for the solution of acoustic and elastic wave propagation. Geophys.61 (1996) 1160–1174.
- [19] E. Faccioli, F. Maggio, A. Quarteroni and A. Tagliani, 2d and 3d elastic wave propagation by pseudo-spectral domain decomposition method. J. Seismology1 (1997) 237–251.
- [20] M.J. Gander, Optimized Schwarz methods. SIAM J. Numer. Anal.44 (2006) 699–731. Zbl1117.65165MR2218966
- [21] M.J. Gander and L. Halpern, Méthodes de relaxation d’ondes pour l’équation de la chaleur en dimension 1. C. R. Acad. Sci. Paris, Sér. I 336 (2003) 519–524. Zbl1028.65100MR1975090
- [22] M.J. Gander, L. Halpern and F. Magoulès, An optimized Schwarz method with two-sided Robin transmission conditions for the Helmholtz equation. Int. J. Numer. Meth. Fluids55 (2007) 163–175. Zbl1125.65114MR2344706
- [23] M.J. Gander, L. Halpern and F. Nataf, Optimal Schwarz waveform relaxation for the one dimensional wave equation. SIAM J. Numer. Anal.41 (2003) 1643–1681. Zbl1085.65077MR2035001
- [24] M.J. Gander, F. Magoulès and F. Nataf, Optimized Schwarz methods without overlap for the Helmholtz equation. SIAM J. Sci. Comput.24 (2002) 38–60. Zbl1021.65061MR1924414
- [25] L. Gerardo-Giorda, L. Mirabella, M. Perego and A. Veneziani, A model adaptive strategy for computational electrocardiology. Domain Decomposition Methods in Science and Engineering XXI (Proceedings of the DD21 Conference). Springer-Verlag. To appear (2013). Zbl1187.92053
- [26] L. Gerardo-Giorda, L. Mirabella, F. Nobile, M. Perego and A. Veneziani, A model-based block-triangular preconditioner for the Bidomain system in electrocardiology. J. Comput. Phys.228 (2009) 3625–3639. Zbl1187.92053MR2511070
- [27] L. Gerardo-Giorda, F. Nobile and C. Vergara, Analysis and optimization of Robin–Robin partitioned procedures in Fluid-Structure Interaction problems. SIAM J. Numer. Anal.48 (2010) 2091–2116. Zbl05931231MR2740543
- [28] L. Gerardo-Giorda, M. Perego and A. Veneziani, Optimized Schwarz coupling of Bidomain and Monodomain models in electrocardiology. ESAIM : M2AN 45 (2011) 309–334. Zbl1274.92022MR2804641
- [29] T. Hagstrom, R.P. Tewarson and A. Jazcilevich, Numerical experiments on a domain decomposition algorithm for nonlinear elliptic boundary value problems. Appl. Math. Lett.1 (1988) 299–302. Zbl0656.65097MR963704
- [30] C.S. Henriquez, Simulating the electrical behavior of cardiac tissue using the Bidomain model. Crit. Rev. Biomed. Eng.21 (1993) 1–77.
- [31] C. Japhet, F. Nataf and F. Rogier, The optimized order 2 method : Application to convection-diffusion problems. Future Gener. Comp. Syst.18 (2001) 17–30. Zbl1050.65124
- [32] S. Linge, J. Sundnes, M. Hanslien, G.T. Lines and A. Tveito, Numerical solution of the bidomain equations. Phil. Trans. R. Soc. A.367 (2009) 1931–1950. Zbl1185.65169MR2512073
- [33] G.T. Lines, M.L. Buist, P. Grottum, A.J. Pullan, J. Sundnes and A. Tveito, Mathematical models and numerical methods for the forward problem in cardiac electrophysiology. Comput. Vis. Sci.5 (2003) 215–239. Zbl1050.92017
- [34] P.-L. Lions, On the Schwarz alternating method. III : a variant for nonoverlapping subdomains, in Third International Symposium on Domain Decomposition Methods for Partial Differential Equations, held in Houston, Texas, edited by T.F. Chan, R. Glowinski, J. Périaux and O. Widlund, SIAM Philadelphia, PA (1990). Zbl0704.65090MR1064345
- [35] L. Luo and Y. Rudy, A model of the ventricular cardiac action potential : depolarization, repolarization and their interaction. Circ. Res.68 (1991) 1501–1526.
- [36] L. Mirabella, F. Nobile and A. Veneziani, An a posteriori error estimator for model adaptivity in electrocardiology. Comput. Methods Appl. Mech. Eng.200 (2011) 2727–2737. Zbl1230.92026MR2811911
- [37] M. Munteanu, L.F. Pavarino and S. Scacchi, A scalable Newton–Krylov–Schwarz method for the Bidomain reaction-diffusion system. SIAM J. Sci. Comput.3 (2009) 3861–3883. Zbl1205.65261MR2556566
- [38] F. Nataf and F. Rogier, Factorization of the convection-diffusion operator and the Schwarz algorithm. M3AS 5 (1995) 67–93. Zbl0826.65102MR1314997
- [39] L.F. Pavarino and S. Scacchi, Multilevel additive Schwarz preconditioners for the Bidomain reaction-diffusion system. SIAM J. Sci. Comput.31 (2008) 420–443. Zbl1185.65179MR2460784
- [40] L.F. Pavarino and S. Scacchi, Parallel Multilevel Schwarz and block preconditioners for the Bidomain parabolic-parabolic and parabolic-elliptic formulations. SIAM J. Sci. Comput.33 (2011) 1897–1919. Zbl1233.65070MR2831039
- [41] M. Pennacchio and V. Simoncini, Efficient algebraic solution of reaction-diffusion systems for the cardiac excitation process. J. Comput. Appl. Math.145 (2002) 49–70. Zbl1006.65102MR1914350
- [42] M. Pennacchio and V. Simoncini, Algebraic multigrid preconditioners for the Bidomain reaction-diffusion system. Appl. Numer. Math.59 (2009) 3033–3050. Zbl1171.92017MR2560833
- [43] M. Pennacchio and V. Simoncini, Non-symmetric Algebraic Multigrid Preconditioners for the Bidomain reaction-diffusion system, in Numerical Mathematics and Advanced Applications, ENUMATH 2009, Part 2 (2010) 729–736. Zbl05896827MR2560833
- [44] M. Perego and A. Veneziani, An efficient generalization of the Rush-Larsen method for solving electro-physiology membrane equations. ETNA35 (2009) 234–256. Zbl1185.92005MR2582815
- [45] M. Potse, B. Dubé, J. Richer and A. Vinet, A comparison of Monodomain and Bidomain Reaction-Diffusion models for Action Potential Propagation in the Human Heart. IEEE Trans. Biomed. Eng. 53 (2006) 2425–2435,.
- [46] A.J. Pullan, M.L. Buist and L.K. Cheng, Mathematical Modelling the Electrical Activity of the Heart. World Scientific, Singapore (2005). Zbl1120.92015MR2174981
- [47] A. Quarteroni and A. Valli, Domain Decomposition Methods for Partial Differential Equations. Oxford Science Publications (1999). Zbl0931.65118MR1857663
- [48] B.J. Roth, Action potential propagation in a thick strand of cardiac muscle. Circ. Res.68 (1991) 162–173.
- [49] F.B. Sachse, Computational Cardiology. Springer, Berlin (2004). Zbl1051.92025
- [50] S. Scacchi, A hybrid multilevel Schwarz method for the Bidomain model. Comput. Methods Appl. Mech. Eng.197 (2008) 4051–4061. Zbl1194.78048MR2458128
- [51] B.F. Smith, P.E. Bjørstad and W. Gropp. Domain Decomposition : Parallel Multilevel Methods for Elliptic Partial Differential Equations. Cambridge University Press (1996). Zbl0857.65126MR1410757
- [52] J. Sundnes, G.T. Lines and A. Tveito, An operator splitting method for solving the bidomain equations coupled to a volume conductor model for the torso. Math. Biosci.194 (2005) 233–248. Zbl1063.92018MR2142490
- [53] A. Toselli, Overlapping Schwarz methods for Maxwell’s equations in three dimensions. Numer. Math.86 (2000) 733–752. Zbl0980.78010MR1794350
- [54] A. Toselli and O. Widlund, Domain Decomposition Methods – Algorithms and Theory. Springer Ser. Comput. Math. 34 (2004). Zbl1069.65138
- [55] M. Veneroni, Reaction-diffusion systems for the macroscopic Bidomain model of the cardiac electric field. Nonlinear Anal. Real World Appl.10 (2009) 849–868. Zbl1167.35403MR2474265
- [56] E.J. Vigmond, F. Aguel and N.A. Trayanova, Computational techniques for solving the Bidomain equations in three dimensions. IEEE Trans. Biomed. Eng.49 (2002) 1260–1269.
- [57] E.J. Vigmond, R. Weber dos Santos, A.J. Prassl, M. Deo and G. Plank, Solvers for the caridac Bidomain equations. Prog. Biophys. Mol. Biol. 96 (2008) 3–18.
- [58] R. Weber dos Santos, G. Planck, S. Bauer and E.J. Vigmond, Parallel multigrid preconditioner for the cardiac Bidomain model. IEEE Trans. Biomed. Eng. 51 (2004) 1960–1968.
- [59] J. Xu and J. Zou, Some nonoverlapping domain decomposition methods. SIAM Review40 (1998) 857–914. Zbl0913.65115MR1659681
- [60] J. Xu, Iterative methods by space decomposition and subspace correction. SIAM Review34 (1992) 581–613. Zbl0788.65037MR1193013
NotesEmbed ?
topTo embed these notes on your page include the following JavaScript code on your page where you want the notes to appear.