Root growth: homogenization in domains with time dependent partial perforations
Yves Capdeboscq; Mariya Ptashnyk
ESAIM: Control, Optimisation and Calculus of Variations (2012)
- Volume: 18, Issue: 3, page 856-876
- ISSN: 1292-8119
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topCapdeboscq, Yves, and Ptashnyk, Mariya. "Root growth: homogenization in domains with time dependent partial perforations." ESAIM: Control, Optimisation and Calculus of Variations 18.3 (2012): 856-876. <http://eudml.org/doc/277819>.
@article{Capdeboscq2012,
abstract = {In this article we derive a macroscopic model for the time evolution of root density, starting from a discrete mesh of roots, using homogenization techniques. In the microscopic model each root grows vertically according to an ordinary differential equation. The roots growth rates depend on the spatial distribution of nutrient in the soil, which also evolves in time, leading to a fully coupled non-linear problem. We derive an effective partial differential equation for the root tip surface and for the nutrient density. },
author = {Capdeboscq, Yves, Ptashnyk, Mariya},
journal = {ESAIM: Control, Optimisation and Calculus of Variations},
keywords = {Homogenization; root growth; time dependent domains; time-dependent boundaries; PDE-ODE system},
language = {eng},
month = {11},
number = {3},
pages = {856-876},
publisher = {EDP Sciences},
title = {Root growth: homogenization in domains with time dependent partial perforations},
url = {http://eudml.org/doc/277819},
volume = {18},
year = {2012},
}
TY - JOUR
AU - Capdeboscq, Yves
AU - Ptashnyk, Mariya
TI - Root growth: homogenization in domains with time dependent partial perforations
JO - ESAIM: Control, Optimisation and Calculus of Variations
DA - 2012/11//
PB - EDP Sciences
VL - 18
IS - 3
SP - 856
EP - 876
AB - In this article we derive a macroscopic model for the time evolution of root density, starting from a discrete mesh of roots, using homogenization techniques. In the microscopic model each root grows vertically according to an ordinary differential equation. The roots growth rates depend on the spatial distribution of nutrient in the soil, which also evolves in time, leading to a fully coupled non-linear problem. We derive an effective partial differential equation for the root tip surface and for the nutrient density.
LA - eng
KW - Homogenization; root growth; time dependent domains; time-dependent boundaries; PDE-ODE system
UR - http://eudml.org/doc/277819
ER -
References
top- E. Acerbi, V. Chiado Piat, G. Dal Maso and D. Percivale, An extension theorem from connected sets, and homogenization in general periodic domains. Nonlinear Anal.18 (1992) 481–496.
- G. Allaire, Homogenization and two-scale convergence. SIAM J. Math. Anal.23 (1992) 1482–1518.
- G. Allaire, A. Damlamian and U. Hornung, Two-scale convergence on periodic surfaces and applications, in Proceedings of the International Conference on Mathematical Modelling of Flow through Porous Media, edited by A. Bourgeat et al., World Scientific Pub., Singapore (1996) 15–25.
- P. Bastian, A. Chavarría-Krauser, Ch. Engwer, W. Jäger, S. Marnach and M. Ptashnyk, Modelling in vitro growth of dense root networks. J. Theor. Biol.254 (2008) 99–109.
- M. Caloin and O. Yu, An extension of the logistic model of plant growth. Ann. Bot.49 (1982) 599–607.
- A. Chavarria-Krauser and U. Schurr, A cellular growth model for root tips. J. Theor. Biol.230 (2004) 21–32.
- S. Chuai-Aree, W. Jäger, H.G. Bock and S. Siripant, Modeling, simulation and visualization of plant root growth and diffusion processes in soil volume, 4th International Workshop on Functional-Structural Plant Models, edited by C. Godin et al. Montpellier, France (2004) 289–293.
- D. Cioranescu and J. Saint Jean Paulin, Homogenization of reticulated structures. Springer (1999).
- L. Dupuy, T. Fourcaud, A. Stokes and F. Danjon, A density-based approach for the modelling of root architecture : application to Maritime pine (Pinus pinaster Ait.) root systems. J. Theor Biol.236 (2005) 323–334.
- L. Dupuy, P.J. Gregory and A.G. Bengough, Root growth models : towards a new generation of continuous approaches. J. Exp. Bot.61 (2010) 2131–2143.
- R.O. Erickson, Modeling of plant growth. Ann. Rev. Plant Physiol.27 (1976) 407–434.
- P. Grabarnik, L. Pagès and A.G. Bengough, Geometrical properties of simulated maize root systems : consequences for length density and intersection density. Plant Soil200 (1998) 157–167.
- A. Marciniak-Czochra and M. Ptashnyk, Derivation of a macroscopic receptor-based model using homogenization techniques, SIAM J. Math. Anal.40 (2008) 215–237.
- G. Nguetseng, A general convergence result for a functional related to the theory of homogenization. SIAM J. Math. Anal.20 (1989) 608–623.
- L. Pagès, How to include organ interactions in models of the root system architecture? The concept of endogenous environment. Ann. For. Sci.57 (2000) 535–541.
- L. Pagès, M.O. Jordan and D. Picard, A simulation-model of the three-dimensional architecture of the maize root-system. Plant Soil1989 (1989) 147–154.
- L. Pagès, G. Vercambre, J.-L. Drouet, F. Lecompte, C. Collet and J. Le Bot, Root Typ : a generic model to depict and analyse the root system architecture. Plant Soil258 (2004) 103–119.
- P. Prusinkiewicz, Modeling plant growth and development. Current Opinion in Plant Biol.7 (2004) 79–83.
- P. Prusinkiewicz and A. Lindenmayer, The algorithmic beauty of plants. Springer-Vergal, New York, USA (1990).
- O. Wilderotter, An adaptive numerical method for the Richards equation with root growth. Plant Soil251 (2003) 255–267.
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