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Displaying similar documents to “Topological Complexity in Protein Structures”

Applications of topology to DNA

Isabel Darcy, De Sumners (1998)

Banach Center Publications

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The following is an expository article meant to give a simplified introduction to applications of topology to DNA.

An operator invariant for handlebody-knots

Kai Ishihara, Atsushi Ishii (2012)

Fundamenta Mathematicae

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A handlebody-knot is a handlebody embedded in the 3-sphere. We improve Luo's result about markings on a surface, and show that an IH-move is sufficient to investigate handlebody-knots with spatial trivalent graphs without cut-edges. We also give fundamental moves with a height function for handlebody-tangles, which helps us to define operator invariants for handlebody-knots. By using the fundamental moves, we give an operator invariant.

A topological model of site-specific recombination that predicts the knot and link type of DNA products

Karin Valencia (2014)

Banach Center Publications

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This is a short summary of a topological model of site-specific recombination, a cellular reaction that creates knots and links out of circular double stranded DNA molecules. The model is used to predict and characterise the topology of the products of a reaction on double stranded DNA twist knots. It is shown that all such products fall into a small family of Montesinos knots and links, meaning that the knot and link type of possible products is significantly reduced, thus aiding their...

A self-linking invariant of virtual knots

Louis H. Kauffman (2004)

Fundamenta Mathematicae

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This paper introduces a self-linking invariant for virtual knots and links, and relates this invariant to a state model called the binary bracket, and to a class of coloring problems for knots and links that include classical coloring problems for cubic graphs.

Virtual Legendrian isotopy

Vladimir Chernov, Rustam Sadykov (2016)

Fundamenta Mathematicae

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An elementary stabilization of a Legendrian knot L in the spherical cotangent bundle ST*M of a surface M is a surgery that results in attaching a handle to M along two discs away from the image in M of the projection of the knot L. A virtual Legendrian isotopy is a composition of stabilizations, destabilizations and Legendrian isotopies. A class of virtual Legendrian isotopy is called a virtual Legendrian knot. In contrast to Legendrian knots, virtual Legendrian knots...

Virtual biquandles

Louis H. Kauffman, Vassily O. Manturov (2005)

Fundamenta Mathematicae

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We describe new approaches for constructing virtual knot invariants. The main background of this paper comes from formulating and bringing together the ideas of biquandle [KR], [FJK], the virtual quandle [Ma2], the ideas of quaternion biquandles by Roger Fenn and Andrew Bartholomew [BF], the concepts and properties of long virtual knots [Ma10], and other ideas in the interface between classical and virtual knot theory. In the present paper we present a new algebraic construction of virtual...

Virtual knot invariants arising from parities

Denis Petrovich Ilyutko, Vassily Olegovich Manturov, Igor Mikhailovich Nikonov (2014)

Banach Center Publications

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In [12, 15] it was shown that in some knot theories the crucial role is played by parity, i.e. a function on crossings valued in {0,1} and behaving nicely with respect to Reidemeister moves. Any parity allows one to construct functorial mappings from knots to knots, to refine many invariants and to prove minimality theorems for knots. In the present paper, we generalise the notion of parity and construct parities with coefficients from an abelian group rather than ℤ₂ and investigate...

Positive knots, closed braids and the Jones polynomial

Alexander Stoimenow (2003)

Annali della Scuola Normale Superiore di Pisa - Classe di Scienze

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Using the recent Gauß diagram formulas for Vassiliev invariants of Polyak-Viro-Fiedler and combining these formulas with the Bennequin inequality, we prove several inequalities for positive knots relating their Vassiliev invariants, genus and degrees of the Jones polynomial. As a consequence, we prove that for any of the polynomials of Alexander/Conway, Jones, HOMFLY, Brandt-Lickorish-Millett-Ho and Kauffman there are only finitely many positive knots with the same polynomial and no...

Virtual knot theory-unsolved problems

Roger Fenn, Louis H. Kauffman, Vassily O. Manturov (2005)

Fundamenta Mathematicae

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The present paper gives a quick survey of virtual and classical knot theory and presents a list of unsolved problems about virtual knots and links. These are all problems in low-dimensional topology with a special emphasis on virtual knots. In particular, we touch new approaches to knot invariants such as biquandles and Khovanov homology theory. Connections to other geometrical and combinatorial aspects are also discussed.

Unknotting number and knot diagram.

Yasutaka Nakanishi (1996)

Revista Matemática de la Universidad Complutense de Madrid

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This note is a continuation of a former paper, where we have discussed the unknotting number of knots with respect to knot diagrams. We will show that for every minimum-crossing knot-diagram among all unknotting-number-one two-bridge knot there exist crossings whose exchange yields the trivial knot, if the third Tait conjecture is true.