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Modelling of Cancer Growth, Evolution and Invasion: Bridging Scales and Models

A. R.A. Anderson, K. A. Rejniak, P. Gerlee, V. Quaranta (2010)

Mathematical Modelling of Natural Phenomena

Since cancer is a complex phenomenon that incorporates events occurring on different length and time scales, therefore multiscale models are needed if we hope to adequately address cancer specific questions. In this paper we present three different multiscale individual-cell-based models, each motivated by cancer-related problems emerging from each of the spatial scales: extracellular, cellular or subcellular, but also incorporating relevant information from other levels. We apply these hybrid...

Moderate deviations for a Curie–Weiss model with dynamical external field

Anselm Reichenbachs (2013)

ESAIM: Probability and Statistics

In the present paper we prove moderate deviations for a Curie–Weiss model with external magnetic field generated by a dynamical system, as introduced by Dombry and Guillotin-Plantard in [C. Dombry and N. Guillotin-Plantard, Markov Process. Related Fields 15 (2009) 1–30]. The results extend those already obtained for the Curie–Weiss model without external field by Eichelsbacher and Löwe in [P. Eichelsbacher and M. Löwe, Markov Process. Related Fields 10 (2004) 345–366]. The Curie–Weiss model with...

Molecular motors and stochastic networks

Reinhard Lipowsky, Steffen Liepelt (2008)

Banach Center Publications

Molecular motors are nano- or colloidal machines that keep the living cell in a highly ordered, stationary state far from equilibrium. This self-organized order is sustained by the energy transduction of the motors, which couple exergonic or 'downhill' processes to endergonic or 'uphill' processes. A particularly interesting case is provided by the chemomechanical coupling of cytoskeletal motors which use the chemical energy released during ATP hydrolysis in order to generate mechanical forces and...

Molecular Simulation in the Canonical Ensemble and Beyond

Zhidong Jia, Ben Leimkuhler (2007)

ESAIM: Mathematical Modelling and Numerical Analysis

In this paper, we discuss advanced thermostatting techniques for sampling molecular systems in the canonical ensemble. We first survey work on dynamical thermostatting methods, including the Nosé-Poincaré method, and generalized bath methods which introduce a more complicated extended model to obtain better ergodicity. We describe a general controlled temperature model, projective thermostatting molecular dynamics (PTMD) and demonstrate that it flexibly accommodates existing alternative thermostatting...

Motion of spiral-shaped polygonal curves by nonlinear crystalline motion with a rotating tip motion

Tetsuya Ishiwata (2015)

Mathematica Bohemica

We consider a motion of spiral-shaped piecewise linear curves governed by a crystalline curvature flow with a driving force and a tip motion which is a simple model of a step motion of a crystal surface. We extend our previous result on global existence of a spiral-shaped solution to a linear crystalline motion for a power type nonlinear crystalline motion with a given rotating tip motion. We show that self-intersection of the solution curves never occurs and also show that facet extinction never...

Motor-Mediated Microtubule Self-Organization in Dilute and Semi-Dilute Filament Solutions

S. Swaminathan, F. Ziebert, I. S. Aranson, D. Karpeev (2010)

Mathematical Modelling of Natural Phenomena

We study molecular motor-induced microtubule self-organization in dilute and semi-dilute filament solutions. In the dilute case, we use a probabilistic model of microtubule interaction via molecular motors to investigate microtubule bundle dynamics. Microtubules are modeled as polar rods interacting through fully inelastic, binary collisions. Our model indicates that initially disordered systems of interacting rods exhibit an orientational instability...

Multiscale Materials Modelling: Case Studies at the Atomistic and Electronic Structure Levels

Emilio Silva, Clemens Först, Ju Li, Xi Lin, Ting Zhu, Sidney Yip (2007)

ESAIM: Mathematical Modelling and Numerical Analysis

Although the intellectual merits of computational modelling across various length and time scales are generally well accepted, good illustrative examples are often lacking. One way to begin appreciating the benefits of the multiscale approach is to first gain experience in probing complex physical phenomena at one scale at a time. Here we discuss materials modelling at two characteristic scales separately, the atomistic level where interactions are specified through classical potentials and the...

Néel and Cross-Tie wall energies for planar micromagnetic configurations

François Alouges, Tristan Rivière, Sylvia Serfaty (2002)

ESAIM: Control, Optimisation and Calculus of Variations

We study a two-dimensional model for micromagnetics, which consists in an energy functional over S 2 -valued vector fields. Bounded-energy configurations tend to be planar, except in small regions which can be described as vortices (Bloch lines in physics). As the characteristic “exchange-length” tends to 0, they converge to planar divergence-free unit norm vector fields which jump along line singularities. We derive lower bounds for the energy, which are explicit functions of the jumps of the limit....

Néel and Cross-Tie Wall Energies for Planar Micromagnetic Configurations

François Alouges, Tristan Rivière, Sylvia Serfaty (2010)

ESAIM: Control, Optimisation and Calculus of Variations


We study a two-dimensional model for micromagnetics, which consists in an energy functional over S2-valued vector fields. Bounded-energy configurations tend to be planar, except in small regions which can be described as vortices (Bloch lines in physics). As the characteristic “exchange-length” tends to 0, they converge to planar divergence-free unit norm vector fields which jump along line singularities. We derive lower bounds for the energy, which are explicit functions of the jumps of the limit....

Neuro-fuzzy modelling based on a deterministic annealing approach

Robert Czabański (2005)

International Journal of Applied Mathematics and Computer Science

This paper introduces a new learning algorithm for artificial neural networks, based on a fuzzy inference system ANBLIR. It is a computationally effective neuro-fuzzy system with parametrized fuzzy sets in the consequent parts of fuzzy if-then rules, which uses a conjunctive as well as a logical interpretation of those rules. In the original approach, the estimation of unknown system parameters was made by means of a combination of both gradient and least-squares methods. The novelty of the learning...

New Results in Velocity Averaging

François Golse (2001/2002)

Séminaire Équations aux dérivées partielles

This paper discusses two new directions in velocity averaging. One is an improvement of the known velocity averaging results for L 1 functions. The other shows how to adapt some of the ideas of velocity averaging to a situation that is essentially a new formulation of the Vlasov-Maxwell system.

No production of entropy in the Euler fluid

R. F. Streater (2004)

Banach Center Publications

We derive the Euler equations as the hydrodynamic limit of a stochastic model of a hard-sphere gas. We show that the system does not produce entropy.

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