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A Galerkin strategy with Proper Orthogonal Decomposition for parameter-dependent problems – Analysis, assessments and applications to parameter estimation

D. Chapelle, A. Gariah, P. Moireau, J. Sainte-Marie (2013)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

We address the issue of parameter variations in POD approximations of time-dependent problems, without any specific restriction on the form of parameter dependence. Considering a parabolic model problem, we propose a POD construction strategy allowing us to obtain some a priori error estimates controlled by the POD remainder – in the construction procedure – and some parameter-wise interpolation errors for the model solutions. We provide a thorough numerical assessment of this strategy with the...

A mechanochemical model of angiogenesis and vasculogenesis

Daphne Manoussaki (2003)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

Vasculogenesis and angiogenesis are two different mechanisms for blood vessel formation. Angiogenesis occurs when new vessels sprout from pre-existing vasculature in response to external chemical stimuli. Vasculogenesis occurs via the reorganization of randomly distributed cells into a blood vessel network. Experimental models of vasculogenesis have suggested that the cells exert traction forces onto the extracellular matrix and that these forces may play an important role in the network forming...

A mechanochemical model of angiogenesis and vasculogenesis

Daphne Manoussaki (2010)

ESAIM: Mathematical Modelling and Numerical Analysis

Vasculogenesis and angiogenesis are two different mechanisms for blood vessel formation. Angiogenesis occurs when new vessels sprout from pre-existing vasculature in response to external chemical stimuli. Vasculogenesis occurs via the reorganization of randomly distributed cells into a blood vessel network. Experimental models of vasculogenesis have suggested that the cells exert traction forces onto the extracellular matrix and that these forces may play an important role in the network forming...

A model of macroscale deformation and microvibration in skeletal muscle tissue

Bernd Simeon, Radu Serban, Linda R. Petzold (2009)

ESAIM: Mathematical Modelling and Numerical Analysis

This paper deals with modeling the passive behavior of skeletal muscle tissue including certain microvibrations at the cell level. Our approach combines a continuum mechanics model with large deformation and incompressibility at the macroscale with chains of coupled nonlinear oscillators. The model verifies that an externally applied vibration at the appropriate frequency is able to synchronize microvibrations in skeletal muscle cells. From the numerical analysis point of view, one faces...

A quasi-Newton algorithm based on a reduced model for fluid-structure interaction problems in blood flows

Jean-Frédéric Gerbeau, Marina Vidrascu (2003)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

We propose a quasi-Newton algorithm for solving fluid-structure interaction problems. The basic idea of the method is to build an approximate tangent operator which is cost effective and which takes into account the so-called added mass effect. Various test cases show that the method allows a significant reduction of the computational effort compared to relaxed fixed point algorithms. We present 2D and 3D fluid-structure simulations performed either with a simple 1D structure model or with shells...

A Quasi-Newton Algorithm Based on a Reduced Model for Fluid-Structure Interaction Problems in Blood Flows

Jean-Frédéric Gerbeau, Marina Vidrascu (2010)

ESAIM: Mathematical Modelling and Numerical Analysis

We propose a quasi-Newton algorithm for solving fluid-structure interaction problems. The basic idea of the method is to build an approximate tangent operator which is cost effective and which takes into account the so-called added mass effect. Various test cases show that the method allows a significant reduction of the computational effort compared to relaxed fixed point algorithms. We present 2D and 3D fluid-structure simulations performed either with a simple 1D structure model or with...

A three dimensional finite element method for biological active soft tissue formulation in cylindrical polar coordinates

Christian Bourdarias, Stéphane Gerbi, Jacques Ohayon (2003)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

A hyperelastic constitutive law, for use in anatomically accurate finite element models of living structures, is suggested for the passive and the active mechanical properties of incompressible biological tissues. This law considers the passive and active states as a same hyperelastic continuum medium, and uses an activation function in order to describe the whole contraction phase. The variational and the FE formulations are also presented, and the FE code has been validated and applied to describe...

A three dimensional finite element method for biological active soft tissue Formulation in cylindrical polar coordinates

Christian Bourdarias, Stéphane Gerbi, Jacques Ohayon (2010)

ESAIM: Mathematical Modelling and Numerical Analysis

A hyperelastic constitutive law, for use in anatomically accurate finite element models of living structures, is suggested for the passive and the active mechanical properties of incompressible biological tissues. This law considers the passive and active states as a same hyperelastic continuum medium, and uses an activation function in order to describe the whole contraction phase. The variational and the FE formulations are also presented, and the FE code has been validated and applied to describe...

Cell-to-muscle homogenization. Application to a constitutive law for the myocardium

Denis Caillerie, Ayman Mourad, Annie Raoult (2003)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

We derive a constitutive law for the myocardium from the description of both the geometrical arrangement of cardiomyocytes and their individual mechanical behaviour. We model a set of cardiomyocytes by a quasiperiodic discrete lattice of elastic bars interacting by means of moments. We work in a large displacement framework and we use a discrete homogenization technique. The macroscopic constitutive law is obtained through the resolution of a nonlinear self-equilibrum system of the discrete lattice...

Cell-to-Muscle homogenization. Application to a constitutive law for the myocardium

Denis Caillerie, Ayman Mourad, Annie Raoult (2010)

ESAIM: Mathematical Modelling and Numerical Analysis

We derive a constitutive law for the myocardium from the description of both the geometrical arrangement of cardiomyocytes and their individual mechanical behaviour. We model a set of cardiomyocytes by a quasiperiodic discrete lattice of elastic bars interacting by means of moments. We work in a large displacement framework and we use a discrete homogenization technique. The macroscopic constitutive law is obtained through the resolution of a nonlinear self-equilibrum system of the discrete lattice...

Global minimizers for axisymmetric multiphase membranes

Rustum Choksi, Marco Morandotti, Marco Veneroni (2013)

ESAIM: Control, Optimisation and Calculus of Variations

We consider a Canham − Helfrich − type variational problem defined over closed surfaces enclosing a fixed volume and having fixed surface area. The problem models the shape of multiphase biomembranes. It consists of minimizing the sum of the Canham − Helfrich energy, in which the bending rigidities and spontaneous curvatures are now phase-dependent, and a line tension penalization for the phase interfaces. By restricting attention to axisymmetric surfaces and phase distributions, we extend our previous...

Intracellular Modelling of Cell-Matrix Adhesion during Cancer Cell Invasion

V. Andasari, M.A.J. Chaplain (2012)

Mathematical Modelling of Natural Phenomena

When invading the tissue, malignant tumour cells (i.e. cancer cells) need to detach from neighbouring cells, degrade the basement membrane, and migrate through the extracellular matrix. These processes require loss of cell-cell adhesion and enhancement of cell-matrix adhesion. In this paper we present a mathematical model of an intracellular pathway for the interactions between a cancer cell and the extracellular matrix. Cancer cells use similar...

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