Using a new definition of the second and third Johsnon homomorphisms, we simplify and extend the work of Morita on the Casson invariant of homology-spheres defined by Heegard splittings. In particular, we calculate the Casson invariant of the homology-sphere obtained by gluing two handlebodies along a homeomorphism of the boundary belonging to the Torelli subgroup.
For each positive integer n the HOMFLYPT polynomial of links specializes to a one-variable polynomial that can be recovered from the representation theory of quantum sl(n). For each such n we build a doubly-graded homology theory of links with this polynomial as the Euler characteristic. The core of our construction utilizes the theory of matrix factorizations, which provide a linear algebra description of maximal Cohen-Macaulay modules on isolated hypersurface singularities.