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Phenotype space and kinship assignment for the Simpson index

Bruce Litow, Dmitry Konovalov (2008)

RAIRO - Theoretical Informatics and Applications - Informatique Théorique et Applications

We investigate the computational structure of the biological kinship assignment problem by abstracting away all biological details that are irrelevant to computation. The computational structure depends on phenotype space, which we formally define. We illustrate this approach by exhibiting an approximation algorithm for kinship assignment in the case of the Simpson index with a priori error bound and running time that is polynomial in the bit size of the population, but exponential in phenotype...

Phenotype space and kinship assignment for the simpson index

Bruce Litow, Dmitry Konovalov (2007)

RAIRO - Theoretical Informatics and Applications

We investigate the computational structure of the biological kinship assignment problem by abstracting away all biological details that are irrelevant to computation. The computational structure depends on phenotype space, which we formally define. We illustrate this approach by exhibiting an approximation algorithm for kinship assignment in the case of the Simpson index with a priori error bound and running time that is polynomial in the bit size of the population, but exponential in phenotype...

Phytoplankton Dynamics: from the Behavior of Cells to a Transport Equation

R. Rudnicki, R. Wieczorek (2010)

Mathematical Modelling of Natural Phenomena

We present models of the dynamics of phytoplankton aggregates. We start with an individual-based model in which aggregates can grow, divide, joint and move randomly. Passing to infinity with the number of individuals, we obtain a model which describes the space-size distribution of aggregates. The density distribution function satisfies a non-linear transport equation, which contains terms responsible for the growth of phytoplankton aggregates, their fragmentation, coagulation, and diffusion.

Picture languages in automatic radiological palm interpretation

Ryszard Tadeusiewicz, Marek Ogiela (2005)

International Journal of Applied Mathematics and Computer Science

The paper presents a new technique for cognitive analysis and recognition of pathological wrist bone lesions. This method uses AI techniques and mathematical linguistics allowing us to automatically evaluate the structure of the said bones, based on palm radiological images. Possibilities of computer interpretation of selected images, based on the methodology of automatic medical image understanding, as introduced by the authors, were created owing to the introduction of an original relational description...

Plant Growth and Development - Basic Knowledge and Current Views

V. Brukhin, N. Morozova (2010)

Mathematical Modelling of Natural Phenomena

One of the most intriguing questions in life science is how living organisms develop and maintain their predominant form and shape via the cascade of the processes of differentiation starting from the single cell. Mathematical modeling of these developmental processes could be a very important tool to properly describe the complex processes of evolution and geometry of morphogenesis in time and space. Here, we summarize the most important biological knowledge on plant development, exploring the...

Population dynamical behavior of a single-species nonlinear diffusion system with random perturbation

Li Zu, Daqing Jiang, Donal O'Regan (2017)

Czechoslovak Mathematical Journal

We consider a single-species stochastic logistic model with the population's nonlinear diffusion between two patches. We prove the system is stochastically permanent and persistent in mean, and then we obtain sufficient conditions for stationary distribution and extinction. Finally, we illustrate our conclusions through numerical simulation.

Population Dynamics of Grayling: Modelling Temperature and Discharge Effects

S. Charles, J.-P. Mallet, H. Persat (2010)

Mathematical Modelling of Natural Phenomena

We propose a matrix population modelling approach in order to describe the dynamics of a grayling (Thymallus thymallus, L. 1758) population living in the Ain river (France). We built a Leslie like model, which integrates the climate changes in terms of temperature and discharge. First, we show how temperature and discharge can be related to life history traits like survival and reproduction. Second, we show how to use the population model to precisely examine the life cycle of grayling : estimated...

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