Let $X$ be a compact hyperkähler manifold containing a complex torus $L$ as a Lagrangian subvariety. Beauville posed the question whether $X$ admits a Lagrangian fibration with fibre $L$. We show that this is indeed the case if $X$ is not projective. If $X$ is projective we find an almost holomorphic Lagrangian fibration with fibre $L$ under additional assumptions on the pair $(X,L)$, which can be formulated in topological or deformation-theoretic terms. Moreover, we show that for any such almost holomorphic Lagrangian...