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Quality improvement of rule-based gene group descriptions using information about GO terms importance occurring in premises of determined rules

Marek Sikora, Aleksandra Gruca (2010)

International Journal of Applied Mathematics and Computer Science

In this paper we present a method for evaluating the importance of GO terms which compose multi-attribute rules. The rules are generated for the purpose of biological interpretation of gene groups. Each multi-attribute rule is a combination of GO terms and, based on relationships among them, one can obtain a functional description of gene groups. We present a method which allows evaluating the influence of a given GO term on the quality of a rule and the quality of a whole set of rules. For each...

Quantitative Analysis of Melanocyte Migration in vitro Based on Automated Cell Tracking under Phase Contrast Microscopy Considering the Combined Influence of Cell Division and Cell-Matrix Interactions

V. Letort, S. Fouliard, G. Letort, I. Adanja, M. Kumasaka, S. Gallagher, O. Debeir, L. Larue, F. Xavier (2010)

Mathematical Modelling of Natural Phenomena

The aim of this study was to describe and analyze the regulation and spatio-temporal dynamics of melanocyte migration in vitro and its coupling to cell division and interaction with the matrix. The melanocyte lineage is particularly interesting because it is involved in both embryonic development and oncogenesis/metastasis (melanoma). Biological experiments were performed on two melanocyte cell lines established from wild-type and β-catenin-transgenic...

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