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Drinking Water Distribution Systems (DWDSs) play a key role in sustainable development of modern society. They are classified as critical infrastructure systems. This imposes a large set of highly demanding requirements on the DWDS operation and requires dedicated algorithms for on-line monitoring and control to tackle related problems. Requirements on DWDS availability restrict the usability of the real plant in the design phase. Thus, a proper model is crucial. Within this paper a DWDS multi-species...
In this paper we present the extension of the kinetic logic proposed by René Thomas for analysis of genetic regulatory gene networks. We consider the case with a Gaussian noise added to the regulation function and propose a method of analyzing the resulting model with a discrete time Markov model.
The HP model is one of the most popular discretized models for attacking the protein folding problem,
i.e., for the computational prediction of the tertiary structure of a protein from its amino acid
sequence. It is based on the assumption that interactions between hydrophobic amino acids are the main
force in the folding process. Therefore, it distinguishes between polar and hydrophobic amino acids only and
tries to embed the amino acid sequence into a two- or three-dimensional grid lattice...
We analyze and suggest improvements to a recently developed approximate continuum-electrostatic model for proteins. The model, called BIBEE/I (boundary-integral based electrostatics estimation with interpolation), was able to estimate electrostatic solvation free energies to within a mean unsigned error of 4% on a test set of more than 600 proteins¶a significant improvement over previous BIBEE models. In this work, we tested the BIBEE/I model for its capability to predict residue-by-residue interactions...
The following is an expository article meant to give a simplified introduction to applications of topology to DNA.
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