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Thermodynamics of DNA microarrays

Enrico Carlon (2008)

Banach Center Publications

DNA microarrays have been widely used in molecular biology laboratories. The main current application of these devices is the determination of the gene expression level for thousands of genes simultaneously. Here we review a recently introduced physical model for hybridization (i.e. the binding of complementary DNA strands) in Affymetrix arrays and compare it to experimental results. The experimental data follow rather well the microscopic model and the approach offers several advantages compared...

Three-dimensional reconstruction from projections

Jiří Jelínek, Karel Segeth, T. R. Overton (1985)

Aplikace matematiky

Computerized tomograhphy is a technique for computation and visualization of density (i.e. X- or γ -ray absorption coefficients) distribution over a cross-sectional anatomic plane from a set of projections. Three-dimensional reconstruction may be obtained by using a system of parallel planes. For the reconstruction of the transverse section it is necessary to choose an appropriate method taking into account the geometry of the data collection, the noise in projection data, the amount of data, the...

Time delays in proliferation and apoptosis for solid avascular tumour

Urszula Foryś, Mikhail Kolev (2003)

Banach Center Publications

The role of time delays in solid avascular tumour growth is considered. The model is formulated in terms of a reaction-diffusion equation and mass conservation law. Two main processes are taken into account-proliferation and apoptosis. We introduce time delay first in underlying apoptosis only and then in both processes. In the absence of necrosis the model reduces to one ordinary differential equation with one discrete delay which describes the changes of tumour radius. Basic properties of the...

Time discrete 2-sex population model

C. O. A. Sowunmi (2003)

Banach Center Publications

A time-discrete 2-sex model with gestation period is analysed. It is significant that the conditions for local stability of a nontrivial steady state do not require that the expected number of female offspring per female equal unity. This is in contrast to results obtained by Curtin and MacCamy [4] and the author [10].

Time domain computational modelling of 1D arterial networks in monochorionic placentas

Victoria E. Franke, Kim H. Parker, Ling Y. Wee, Nicholas M. Fisk, Spencer J. Sherwin (2003)

ESAIM: Mathematical Modelling and Numerical Analysis - Modélisation Mathématique et Analyse Numérique

In this paper we outline the hyperbolic system of governing equations describing one-dimensional blood flow in arterial networks. This system is numerically discretised using a discontinuous Galerkin formulation with a spectral/ h p element spatial approximation. We apply the numerical model to arterial networks in the placenta. Starting with a single placenta we investigate the velocity waveform in the umbilical artery and its relationship with the distal bifurcation geometry and the terminal resistance....

Time domain computational modelling of 1D arterial networks in monochorionic placentas

Victoria E. Franke, Kim H. Parker, Ling Y. Wee, Nicholas M. Fisk, Spencer J. Sherwin (2010)

ESAIM: Mathematical Modelling and Numerical Analysis

In this paper we outline the hyperbolic system of governing equations describing one-dimensional blood flow in arterial networks. This system is numerically discretised using a discontinuous Galerkin formulation with a spectral/hp element spatial approximation. We apply the numerical model to arterial networks in the placenta. Starting with a single placenta we investigate the velocity waveform in the umbilical artery and its relationship with the distal bifurcation geometry and the terminal resistance....

Time to the convergence of evolution in the space of population states

Iwona Karcz-Dulęba (2004)

International Journal of Applied Mathematics and Computer Science

Phenotypic evolution of two-element populations with proportional selection and normally distributed mutation is considered. Trajectories of the expected location of the population in the space of population states are investigated. The expected location of the population generates a discrete dynamical system. The study of its fixed points, their stability and time to convergence is presented. Fixed points are located in the vicinity of optima and saddles. For large values of the standard deviation...

Time-varying time-delay estimation for nonlinear systems using neural networks

Yonghong Tan (2004)

International Journal of Applied Mathematics and Computer Science

Nonlinear dynamic processes with time-varying time delays can often be encountered in industry. Time-delay estimation for nonlinear dynamic systems with time-varying time delays is an important issue for system identification. In order to estimate the dynamics of a process, a dynamic neural network with an external recurrent structure is applied in the modeling procedure. In the case where a delay is time varying, a useful way is to develop on-line time-delay estimation mechanisms to track the time-delay...

Towards prediction of HCV therapy efficiency.

Wasik, Szymon, Jackowiak, Paulina, Krawczyk, Jacek B., Kedziora, Paweł, Formanowicz, Piotr, Figlerowicz, Marek, Błażewicz, Jacek (2010)

Computational & Mathematical Methods in Medicine

Towards robustness in neural network based fault diagnosis

Krzysztof Patan, Marcin Witczak, Józef Korbicz (2008)

International Journal of Applied Mathematics and Computer Science

Challenging design problems arise regularly in modern fault diagnosis systems. Unfortunately, classical analytical techniques often cannot provide acceptable solutions to such difficult tasks. This explains why soft computing techniques such as neural networks become more and more popular in industrial applications of fault diagnosis. Taking into account the two crucial aspects, i.e., the nonlinear behaviour of the system being diagnosed as well as the robustness of a fault diagnosis scheme with...

Towards Sub-cellular Modeling with Delaunay Triangulation

G. Grise, M. Meyer-Hermann (2010)

Mathematical Modelling of Natural Phenomena

In this article a novel model framework to simulate cells and their internal structure is described. The model is agent-based and suitable to simulate single cells with a detailed internal structure as well as multi-cellular compounds. Cells are simulated as a set of many interacting particles, with neighborhood relations defined via a Delaunay triangulation. The interacting sub-particles of a cell can assume specific roles – i.e., membrane sub-particle, internal sub-particle, organelles, etc –,...

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