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Simulating Kinetic Processes in Time and Space on a Lattice

J. P. Gill, K. M. Shaw, B. L. Rountree, C. E. Kehl, H. J. Chiel (2011)

Mathematical Modelling of Natural Phenomena

We have developed a chemical kinetics simulation that can be used as both an educational and research tool. The simulator is designed as an accessible, open-source project that can be run on a laptop with a student-friendly interface. The application can potentially be scaled to run in parallel for large simulations. The simulation has been successfully used in a classroom setting for teaching basic electrochemical properties. We have shown that...

Spatial Dynamics of Contact-Activated Fibrin Clot Formation in vitro and in silico in Haemophilia B: Effects of Severity and Ahemphil B Treatment

A. A. Tokarev, Yu. V. Krasotkina, M. V. Ovanesov, M. A. Panteleev, M. A. Azhigirova, V. A. Volpert, F. I. Ataullakhanov, A. A. Butilin (2010)

Mathematical Modelling of Natural Phenomena

Spatial dynamics of fibrin clot formation in non-stirred system activated by glass surface was studied as a function of FIX activity. Haemophilia B plasma was obtained from untreated patients with different levels of FIX deficiency and from severe haemophilia B patient treated with FIX concentrate (Ahemphil B) during its clearance with half-life t1/2=12 hours. As reported previously (Ataullakhanov et al. Biochim Biophys Acta 1998; 1425: 453-468), clot growth in space showed two distinct phases:...

Stationary solutions of aerotaxis equations

Piotr Knosalla, Tadeusz Nadzieja (2015)

Applicationes Mathematicae

We study the existence and uniqueness of the steady state in a model describing the evolution of density of bacteria and oxygen dissolved in water filling a capillary. The steady state is a stationary solution of a nonlinear and nonlocal problem which depends on the energy function and contains two parameters: the total mass of the colony of bacteria and the concentration (or flux) of oxygen at the end of the capillary. The existence and uniqueness of solutions depend on relations between these...

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