Factor-union representation of phenotype systems.
Fatgraph models of RNA structure
In this review paper we discuss fatgraphs as a conceptual framework for RNA structures. We discuss various notions of coarse-grained RNA structures and relate them to fatgraphs.We motivate and discuss the main intuition behind the fatgraph model and showcase its applicability to canonical as well as noncanonical base pairs. Recent discoveries regarding novel recursions of pseudoknotted (pk) configurations as well as their translation into context-free grammars for pk-structures are discussed. This...
Feedback control in a periodic delay single-species difference system.
Feedback control variables have no influence on the permanence of a discrete -species Schoener competition system with time delays.
Feedback regulation of logistic growth.
Feeding Threshold for Predators Stabilizes Predator-Prey Systems
Since Rosenzweig showed the destabilisation of exploited ecosystems, the so called Paradox of enrichment, several mechanisms have been proposed to resolve this paradox. In this paper we will show that a feeding threshold in the functional response for predators feeding on a prey population stabilizes the system and that there exists a minimum threshold value above which the predator-prey system is unconditionally stable with respect to enrichment. Two models are analysed, the first being the classical...
First-passage competition with different speeds: positive density for both species is impossible.
Fixed Point Theorems of the Banach and Krasnosel’skii Type for Mappings on -tuple Cartesian Product of Banach Algebras and Systems of Generalized Gripenberg’s Equations
In this paper we prove some fixed point theorems of the Banach and Krasnosel’skii type for mappings on the -tuple Cartesian product of a Banach algebra over . Using these theorems existence results for a system of integral equations of the Gripenberg’s type are proved. A sufficient condition for the nonexistence of blowing-up solutions of this system of integral equations is also proved.
Food Webs, Competition Graphs, and Habitat Formation
One interesting example of a discrete mathematical model used in biology is a food web. The first biology courses in high school and in college present the fundamental nature of a food web, one that is understandable by students at all levels. But food webs as part of a larger system are often not addressed. This paper presents materials that can be used in undergraduate classes in biology (and mathematics) and provides students with the opportunity...
Fractional virus epidemic model on financial networks
In this study, we present an epidemic model that characterizes the behavior of a financial network of globally operating stock markets. Since the long time series have a global memory effect, we represent our model by using the fractional calculus. This model operates on a network, where vertices are the stock markets and edges are constructed by the correlation distances. Thereafter, we find an analytical solution to commensurate system and use the well-known differential transform method to obtain...
Fragmentation-Coagulation Models of Phytoplankton
We present two new models of the dynamics of phytoplankton aggregates. The first one is an individual-based model. Passing to infinity with the number of individuals, we obtain an Eulerian model. This model describes the evolution of the density of the spatial-mass distribution of aggregates. We show the existence and uniqueness of solutions of the evolution equation.
Free Boundary Problems Associated with Multiscale Tumor Models
The present paper introduces a tumor model with two time scales, the time t during which the tumor grows and the cycle time of individual cells. The model also includes the effects of gene mutations on the population density of the tumor cells. The model is formulated as a free boundary problem for a coupled system of elliptic, parabolic and hyperbolic equations within the tumor region, with nonlinear and nonlocal terms. Existence and uniqueness theorems are proved, and properties of the free boundary...
From Bistability to Coupling-Induced Oscillations in a Two-Habitat Model for the Rotifer Population Dynamics
We study the role of interactions between habitats in rotifer dynamics. For this purpose we use a modified version of the Consensus model. The Consensus model has been shown to be realistic enough to reproduce distinguishing features of the rotifer species dynamics. Being uncoupled, intrinsically bistable rotifer populations, which inhabit the regions under different environmental conditions, do not impact each other. We show that migration of the rotifers between the habitats leads to the transformation...
From convergence of operator semigroups to gene expression, and back again
The subject of the paper is reciprocal influence of pure mathematics and applied sciences. We illustrate the idea by giving a review of mathematical results obtained recently, related to the model of stochastic gene expression due to Lipniacki et al. [38]. In this model, featuring mRNA and protein levels, and gene activity, the stochastic part of processes involved in gene expression is distinguished from the part that seems to be mostly deterministic, and the dynamics is expressed by means of a...
From Quasispecies Theory to Viral Quasispecies: How Complexity has Permeated Virology
RNA viruses replicate as complex and dynamic mutant distributions. They are termed viral quasispecies, in recognition of the fundamental contribution of quasispecies theory in our understanding of error-prone replicative entities. Viral quasispecies have launched a fertile field of transdiciplinary research, both experimental and theoretical. Here we review the origin and some implications of the quasispecies concept, with emphasis on internal interactions...