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In vitro Vasculogenesis Models Revisited - Measurement of VEGF Diffusion in Matrigel

T. Miura, R. Tanaka (2009)

Mathematical Modelling of Natural Phenomena

The circulatory system is one of the first to function during development. The earliest event in the system's development is vasculogenesis, whereby vascular progeniter cells form clusters called blood islands, which later fuse to form capillary networks. There exists a very good in vitro system that mimics this process. When HUVECs (Human Umbilical Vein Endothelial Cells) are cultured on Matrigel, they spontaneously form a capillary network structure. Two theoretical models have been proposed...

Indecision in Neural Decision Making Models

J. Milton, P. Naik, C. Chan, S. A. Campbell (2010)

Mathematical Modelling of Natural Phenomena

Computational models for human decision making are typically based on the properties of bistable dynamical systems where each attractor represents a different decision. A limitation of these models is that they do not readily account for the fragilities of human decision making, such as “choking under pressure”, indecisiveness and the role of past experiences on current decision making. Here we examine the dynamics of a model of two interacting neural populations with mutual time–delayed inhibition....

Individual Cell-Based Model for In-Vitro Mesothelial Invasion of Ovarian Cancer

C. Giverso, M. Scianna, L. Preziosi, N. Lo Buono, A. Funaro (2010)

Mathematical Modelling of Natural Phenomena

In vitro transmesothelial migration assays of ovarian cancer cells, isolated or aggregated in multicellular spheroids, are reproduced deducing suitable Cellular Potts Models (CPM). We show that the simulations are in good agreement with the experimental evidence and that the overall process is regulated by the activity of matrix metalloproteinases (MMPs) and by the interplay of the adhesive properties of the cells with the extracellular matrix and...

Influence of time delays on the Hahnfeldt et al. angiogenesis model dynamics

Marek Bodnar, Urszula Foryś (2009)

Applicationes Mathematicae

We study the influence of time delays on the dynamics of the general Hahnfeldt et al. model of an angiogenesis process. We analyse the dynamics of the system for different values of the parameter α which reflects the strength of stimulation of the vessel formation process. Time delays are introduced in three subprocesses: tumour growth, stimulation and inhibition of vessel formation (represented by endothelial cell dynamics). We focus on possible destabilisation of the positive steady state due...

Influenza Transmission in Preschools: Modulation by contact landscapes and interventions

A.A. Adalja, P.S. Crooke, J.R. Hotchkiss (2010)

Mathematical Modelling of Natural Phenomena

Epidemiologic data suggest that schools and daycare facilities likely play a major role in the dissemination of influenza. Pathogen transmission within such small, inhomogenously mixed populations is difficult to model using traditional approaches. We developed simulation based mathematical tool to investigate the effects of social contact networks on pathogen dissemination in a setting analogous to a daycare center or grade school. Here we show...

Input-output systems in Biology and Chemistry and a class of mathematical models describing them

Erich Bohl, Ivo Marek (2005)

Applications of Mathematics

Our aim is to show a class of mathematical models in application to some problems of cell biology. Typically, our models are described via classical chemical networks. This property is visualized by a conservation law. Mathematically, this conservation law guarantees most of the mathematical properties of the models such as global existence and uniqueness of solutions as well as positivity of the solutions for positive data. These properties are consequences of the fact that the infinitesimal generators...

Integrating Photosynthesis, Respiration, Biomass Partitioning, and Plant Growth: Developing a Microsoft Excel®-based Simulation Model of Wisconsin Fast Plant (Brassica rapa, Brassicaceae) Growth with Undergraduate Students

Y. L. Grossman, A. B. Berdanier, M. L. Custic, L. R. Feeley, S. F. Peake, A. J. Saenz, K. S. Sitton (2011)

Mathematical Modelling of Natural Phenomena

This paper demonstrates the development of a simple model of carbon flow during plant growth. The model was developed by six undergraduate students and their instructor as a project in a plant ecophysiology course. The paper describes the structure of the model including the equations that were used to implement it in Excel®, the plant growth experiments that were conducted to obtain information for parameterizing and testing the model, model performance, student responses to the modeling project,...

Intensified Doxorubicin-Based Regimen Efficacy in Residual Non-Hodgkin's Lymphoma Disease: Towards a Computationally Supported Treatment Improvement

Y. Kogan, B. Ribba, K. Marron, N. Dahan, V. Vainstein, Z. Agur (2010)

Mathematical Modelling of Natural Phenomena

Despite recent advances, treatment of patients with aggressive Non-Hodgkin's lymphoma (NHL2) has yet to be optimally designed. Notwithstanding the contribution of molecular treatments, intensification of chemotherapeutic regimens may still be beneficial. Hoping to aid in the design of intensified chemotherapy, we put forward a mathematical and computational model that analyses the effect of Doxorubicin on NHL over a wide range of patho-physiological conditions. The model represents tumour growth...

Intracellular Modelling of Cell-Matrix Adhesion during Cancer Cell Invasion

V. Andasari, M.A.J. Chaplain (2012)

Mathematical Modelling of Natural Phenomena

When invading the tissue, malignant tumour cells (i.e. cancer cells) need to detach from neighbouring cells, degrade the basement membrane, and migrate through the extracellular matrix. These processes require loss of cell-cell adhesion and enhancement of cell-matrix adhesion. In this paper we present a mathematical model of an intracellular pathway for the interactions between a cancer cell and the extracellular matrix. Cancer cells use similar...

Invariant subspaces for grasping internal forces and non-interacting force-motion control in robotic manipulation

Paolo Mercorelli (2012)

Kybernetika

This paper presents a parametrization of a feed-forward control based on structures of subspaces for a non-interacting regulation. With advances in technological development, robotics is increasingly being used in many industrial sectors, including medical applications (e. g., micro-manipulation of internal tissues or laparoscopy). Typical problems in robotics and general mechanisms may be mathematically formalized and analyzed, resulting in outcomes so general that it is possible to speak of structural...

Investigation of the Migration/Proliferation Dichotomy and its Impact on Avascular Glioma Invasion

K. Böttger, H. Hatzikirou, A. Chauviere, A. Deutsch (2012)

Mathematical Modelling of Natural Phenomena

Gliomas are highly invasive brain tumors that exhibit high and spatially heterogeneous cell proliferation and motility rates. The interplay of proliferation and migration dynamics plays an important role in the invasion of these malignant tumors. We analyze the regulation of proliferation and migration processes with a lattice-gas cellular automaton (LGCA). We study and characterize the influence of the migration/proliferation dichotomy (also known...

Kendall's tau-type rank statistics in genome data

Moonsu Kang, Pranab Kumar Sen (2008)

Applications of Mathematics

High-dimensional data models abound in genomics studies, where often inadequately small sample sizes create impasses for incorporation of standard statistical tools. Conventional assumptions of linearity of regression, homoscedasticity and (multi-) normality of errors may not be tenable in many such interdisciplinary setups. In this study, Kendall's tau-type rank statistics are employed for statistical inference, avoiding most of parametric assumptions to a greater extent. The proposed procedures...

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